Simultaneous Confidence Intervals:

• Klingenberg, B and  Satopää, V. “Simultaneous confidence intervals for comparing margins of multivariate binary data”, Computational Statistics & Data Analysis, 64, 87–98, 2013.
  • R code: see Supplementary Materials
  • (Fake) data set of AEs in group 1 and group 2: datagroup1, datagroup2
  • C++ code implementation in R for fast restricted ML estimation: mph_fast
  • C++ code implementation in R for fast restricted GEE estimation: GEE_fast

• Klingenberg, B, “Simultaneous score confidence bounds for risk differences in multiple comparisons to a control”,Computational Statistics & Data Analysis, 56, 1079–1089, 2012.
  
  • Abstract
    
  • R code

• Klingenberg, B, “Simultaneous confidence bounds for relative risks in multiple comparison to control”, Statistics in Medicine, 29(30), 3232-44, 2010
  • Abstract
  • R code